PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.087850.1
Common NameCsa_2G406060, LOC101212622
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 133aa    MW: 15573.5 Da    PI: 9.3183
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.087850.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.26.2e-3249107159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK vk+++fprsYY+C+ +gC+vkk+++r ++d+ vv +tYeg H h+
  Cucsa.087850.1  49 LDDGYRWRKYGQKAVKNNKFPRSYYKCSNEGCKVKKQIQRLTNDEGVVLTTYEGVHSHP 107
                     59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-3334107IPR003657WRKY domain
SuperFamilySSF1182902.22E-2842108IPR003657WRKY domain
PROSITE profilePS5081129.13844109IPR003657WRKY domain
SMARTSM007742.9E-3649108IPR003657WRKY domain
PfamPF031066.4E-2650107IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MDEEEDDELE EERSLKKVKS EESGGELKKK KKIRKRRFAF ETRSQVDVLD DGYRWRKYGQ  60
KAVKNNKFPR SYYKCSNEGC KVKKQIQRLT NDEGVVLTTY EGVHSHPIEK PHDSFQNILT  120
HMHIYPSSSS SF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2739106774Probable WRKY transcription factor 4
2lex_A2e-2739106774Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818153e-75LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBankLN7132573e-75LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138624.21e-94PREDICTED: probable WRKY transcription factor 45
SwissprotQ9S7639e-51WRK45_ARATH; Probable WRKY transcription factor 45
TrEMBLA0A0A0LT011e-94A0A0A0LT01_CUCSA; Uncharacterized protein
STRINGGSMUA_Achr9P01400_0014e-53(Musa acuminata)
STRINGSi026859m5e-53(Setaria italica)
STRINGGRMZM2G054125_P015e-53(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF115634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01970.14e-50WRKY DNA-binding protein 45
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]